This module provides an implementation of the heap queue algorithm, also known as the priority queue algorithm.
Heaps are binary trees for which every parent node has a value less than or equal to any of its children. This implementation uses arrays for which heap[k] <= heap[2*k+1] and heap[k] <= heap[2*k+2] for all k, counting elements from zero. For the sake of comparison, non-existing elements are considered to be infinite. The interesting property of a heap is that its smallest element is always the root, heap[0].
The API below differs from textbook heap algorithms in two aspects: (a) We use zero-based indexing. This makes the relationship between the index for a node and the indexes for its children slightly less obvious, but is more suitable since Python uses zero-based indexing. (b) Our pop method returns the smallest item, not the largest (called a “min heap” in textbooks; a “max heap” is more common in texts because of its suitability for in-place sorting).
These two make it possible to view the heap as a regular Python list without surprises: heap[0] is the smallest item, and heap.sort() maintains the heap invariant!
To create a heap, use a list initialized to [], or you can transform a populated list into a heap via function heapify().
The following functions are provided:
Pop and return the smallest item from the heap, and also push the new item. The heap size doesn’t change. If the heap is empty, IndexError is raised.
This one step operation is more efficient than a heappop() followed by heappush() and can be more appropriate when using a fixed-size heap. The pop/push combination always returns an element from the heap and replaces it with item.
The value returned may be larger than the item added. If that isn’t desired, consider using heappushpop() instead. Its push/pop combination returns the smaller of the two values, leaving the larger value on the heap.
The module also offers three general purpose functions based on heaps.
Merge multiple sorted inputs into a single sorted output (for example, merge timestamped entries from multiple log files). Returns an iterator over the sorted values.
Similar to sorted(itertools.chain(*iterables)) but returns an iterable, does not pull the data into memory all at once, and assumes that each of the input streams is already sorted (smallest to largest).
The latter two functions perform best for smaller values of n. For larger values, it is more efficient to use the sorted() function. Also, when n==1, it is more efficient to use the built-in min() and max() functions.
A heapsort can be implemented by pushing all values onto a heap and then popping off the smallest values one at a time:
>>> def heapsort(iterable):
... 'Equivalent to sorted(iterable)'
... h = []
... for value in iterable:
... heappush(h, value)
... return [heappop(h) for i in range(len(h))]
...
>>> heapsort([1, 3, 5, 7, 9, 2, 4, 6, 8, 0])
[0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
Heap elements can be tuples. This is useful for assigning comparison values (such as task priorities) alongside the main record being tracked:
>>> h = []
>>> heappush(h, (5, 'write code'))
>>> heappush(h, (7, 'release product'))
>>> heappush(h, (1, 'write spec'))
>>> heappush(h, (3, 'create tests'))
>>> heappop(h)
(1, 'write spec')
A priority queue is common use for a heap, and it presents several implementation challenges:
A solution to the first two challenges is to store entries as 3-element list including the priority, an entry count, and the task. The entry count serves as a tie-breaker so that two tasks with the same priority are returned in the order they were added. And since no two entry counts are the same, the tuple comparison will never attempt to directly compare two tasks.
The remaining challenges revolve around finding a pending task and making changes to its priority or removing it entirely. Finding a task can be done with a dictionary pointing to an entry in the queue.
Removing the entry or changing its priority is more difficult because it would break the heap structure invariants. So, a possible solution is to mark an entry as invalid and optionally add a new entry with the revised priority:
pq = [] # the priority queue list
counter = itertools.count(1) # unique sequence count
task_finder = {} # mapping of tasks to entries
INVALID = 0 # mark an entry as deleted
def add_task(priority, task, count=None):
if count is None:
count = next(counter)
entry = [priority, count, task]
task_finder[task] = entry
heappush(pq, entry)
def get_top_priority():
while True:
priority, count, task = heappop(pq)
del task_finder[task]
if count is not INVALID:
return task
def delete_task(task):
entry = task_finder[task]
entry[1] = INVALID
def reprioritize(priority, task):
entry = task_finder[task]
add_task(priority, task, entry[1])
entry[1] = INVALID
Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for all k, counting elements from 0. For the sake of comparison, non-existing elements are considered to be infinite. The interesting property of a heap is that a[0] is always its smallest element.
The strange invariant above is meant to be an efficient memory representation for a tournament. The numbers below are k, not a[k]:
0
1 2
3 4 5 6
7 8 9 10 11 12 13 14
15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
In the tree above, each cell k is topping 2*k+1 and 2*k+2. In an usual binary tournament we see in sports, each cell is the winner over the two cells it tops, and we can trace the winner down the tree to see all opponents s/he had. However, in many computer applications of such tournaments, we do not need to trace the history of a winner. To be more memory efficient, when a winner is promoted, we try to replace it by something else at a lower level, and the rule becomes that a cell and the two cells it tops contain three different items, but the top cell “wins” over the two topped cells.
If this heap invariant is protected at all time, index 0 is clearly the overall winner. The simplest algorithmic way to remove it and find the “next” winner is to move some loser (let’s say cell 30 in the diagram above) into the 0 position, and then percolate this new 0 down the tree, exchanging values, until the invariant is re-established. This is clearly logarithmic on the total number of items in the tree. By iterating over all items, you get an O(n log n) sort.
A nice feature of this sort is that you can efficiently insert new items while the sort is going on, provided that the inserted items are not “better” than the last 0’th element you extracted. This is especially useful in simulation contexts, where the tree holds all incoming events, and the “win” condition means the smallest scheduled time. When an event schedule other events for execution, they are scheduled into the future, so they can easily go into the heap. So, a heap is a good structure for implementing schedulers (this is what I used for my MIDI sequencer :-).
Various structures for implementing schedulers have been extensively studied, and heaps are good for this, as they are reasonably speedy, the speed is almost constant, and the worst case is not much different than the average case. However, there are other representations which are more efficient overall, yet the worst cases might be terrible.
Heaps are also very useful in big disk sorts. You most probably all know that a big sort implies producing “runs” (which are pre-sorted sequences, which size is usually related to the amount of CPU memory), followed by a merging passes for these runs, which merging is often very cleverly organised [1]. It is very important that the initial sort produces the longest runs possible. Tournaments are a good way to that. If, using all the memory available to hold a tournament, you replace and percolate items that happen to fit the current run, you’ll produce runs which are twice the size of the memory for random input, and much better for input fuzzily ordered.
Moreover, if you output the 0’th item on disk and get an input which may not fit in the current tournament (because the value “wins” over the last output value), it cannot fit in the heap, so the size of the heap decreases. The freed memory could be cleverly reused immediately for progressively building a second heap, which grows at exactly the same rate the first heap is melting. When the first heap completely vanishes, you switch heaps and start a new run. Clever and quite effective!
In a word, heaps are useful memory structures to know. I use them in a few applications, and I think it is good to keep a ‘heap’ module around. :-)
Footnotes
| [1] | The disk balancing algorithms which are current, nowadays, are more annoying than clever, and this is a consequence of the seeking capabilities of the disks. On devices which cannot seek, like big tape drives, the story was quite different, and one had to be very clever to ensure (far in advance) that each tape movement will be the most effective possible (that is, will best participate at “progressing” the merge). Some tapes were even able to read backwards, and this was also used to avoid the rewinding time. Believe me, real good tape sorts were quite spectacular to watch! From all times, sorting has always been a Great Art! :-) |